Kappa-Carrageenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Kappa-Carrageenase
  Conformer 1
(PDB) 		5ocq (A)
  Conformer 2
(PDB) 		1dyp (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 224 0.36   41 - 147   160 - 184   198 - 292
2 24 0.27   148 - 159   185 - 197

Sequence


           ______________________________________________________________________________________________________________________14 
 5ocq(A) : SMQPPIAKPGETWILQAKRSDEFNVKDATKWNFQTENYGVWSWKNENATVSNGKLKLTTKRESHQRTFWDGCNQQQVANYPLYYTSGVAKSRATGNYGYYEARIKGASTFPGVSPAFWMY 
         :                                                                                                                          
 1dyp(A) : *SqPPIAKPGETWILQAKRSDEFNVKDATKWNFQTENYGVWSWKNENATVSKGKLKLTTKRESHQRTFWDGCNQQQVANYPLYYTSGVAKSRATGNYGYYEARIKGASTFPGVSPAFW-y 
           ______________________________________________________________________________________________________________________14 

           7_________159______________________184______193_________________________________________________________________________ 
 5ocq(A) : STIDRSLTKEGDVQYSEIDVVDLTQKSAVRESDHDLHNIVVKNGKPTWMRPGSFPQTNHNGYHLPFDPRNDFHTYGVNVTKDKITWYVDGEIVGEKDNLYWHRQMNLTLSQGLRAPHTQW 
         :                                                                                                                          
 1dyp(A) : STIDRSLTKEGDVQYSEIDVVELTQKSAVRESDHDLHNIVVKNGKPTW-rPGSFPQTNHNGYHLPFDPRNDFHTYGVNVTKDKITWYVDGEIVGEKDNLYWHRQ-nLTLSQGLRAPHTQW 
           7_________159______________________184______193_________________________________________________________________________ 

           _______________________________                                                                                          
 5ocq(A) : KCNQFYPSANKSAEGFPTSMEVDYVRTWVKV                                                                                          
         :                                                                                                                          
 1dyp(A) : KCNQFYPSANKSAEGFPTS-eVDYVRTWVKV                                                                                          
           _______________________________                                                                                          

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.6
Translation
(A) 		-0.3
Closure
(%) 		72.9
Bending Residues
( green ) 		  147 - 148
  159 - 160
  184 - 185
  193 - 201
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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