Laminarinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Laminarinase
  Conformer 1
(PDB) 		3azz (B)
  Conformer 2
(PDB) 		3azy (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 217 0.44   11 - 33   48 - 229   242 - 243   245 - 254
2 27 0.45   34 - 47   230 - 241   244 - 244

Sequence


           ________________________33____________47________________________________________________________________________________ 
 3azz(B) : EDWQLVWSQEFDDGVIDPNIWNFEIGNGHAKGIPGWGNGELEYYTDENAFVENGCLVIEARKEQVSDEYGTYDYTSARMTTEGKFEIKYGKIEIRAKLPKGKGIWPALWMLGNNIGEVGW 
         :                                                                                                                          
 3azy(A) : EDWQLVWSQEFDDGVIDPNIWNFEIGNGHAKGIPGWGNGELEYYTDENAFVENGCLVIEARKEQVSDEYGTYDYTSARMTTEGKFEIKYGKIEIRAKLPKGKGIWPALWMLGNNIGEVGW 
           ________________________33____________47________________________________________________________________________________ 

           ___________________________________________________________________________________________________229________240_______ 
 3azz(B) : PTCGEIDIMEMLGHDTRTVYGTAHGPGYSGGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVDGQLYHVLSKDELAELGLEWVFDHPFFLILNVAVGGYWPGYPDETTQFPQRMY 
         :                                                                                                                          
 3azy(A) : PTCGEIDIMEMLGHDTRTVYGTAHGPGYSGGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVDGQLYHVLSKDELAELGLEWVFDHPFFLILNVAVGGYWPGYPDETTQFPQRMY 
           ___________________________________________________________________________________________________229________240_______ 

           ___________                                                                                                              
 3azz(B) : IDYIRVYKDM*                                                                                                              
         :                                                                                                                          
 3azy(A) : IDYIRVYKDMN                                                                                                              
           ___________                                                                                                              

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.3
Translation
(A) 		0.1
Closure
(%) 		22.2
Bending Residues
( green ) 		  33 - 34
  47 - 48
  229 - 230
  240 - 245
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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