Laminarinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Laminarinase
  Conformer 1
(PDB) 		3azz (C)
  Conformer 2
(PDB) 		3azy (D)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 150 0.13   16 - 91   100 - 117   134 - 147   166 - 178   222 - 250
2 69 0.12   92 - 99   118 - 133   148 - 149   179 - 221

Sequence


           __________________________________________________________________________________91______99_______________117__________ 
 3azz(C) : EDWQLVWSQEFDDGVIDPNIWNFEIGNGHAKGIPGWGNGELEYYTDENAFVENGCLVIEARKEQVSDEYGTYDYTSARMTTEGKFEIKYGKIEIRAKLPKGKGIWPALWMLGNNIGEVGW 
         :                                                                                                                          
 3azy(D) : EDWQLVWSQEFDDGVIDPNIWNFEIGNGHAKGIPGWGNGELEYYTDENAFVENGCLVIEARKEQVSDEYGTYDYTSARMTTEGKFEIKYGKIEIRAKLPKGKGIWPALWMLGNNIGEVGW 
           __________________________________________________________________________________91______99_______________117__________ 

           ___133__________146_____________________________178________________________________________221__________________________ 
 3azz(C) : PTCGEIDIMEMLGHDTRTVYGTAHGPGYSGGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVDGQLYHVLSKDELAELGLEWVFDHPFFLILNVAVGGYWPGYPDETTQFPQRMY 
         :                                                                                                                          
 3azy(D) : PTCGEIDIMEMLGHDTRTVYGTAHGPGYSGGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVDGQLYHVLSKDELAELGLEWVFDHPFFLILNVAVGGYWPGYPDETTQFPQRMY 
           ___133__________146_____________________________178________________________________________221__________________________ 

           ___________                                                                                                              
 3azz(C) : IDYIRVYKDM*                                                                                                              
         :                                                                                                                          
 3azy(D) : IDYIRVYKDMN                                                                                                              
           ___________                                                                                                              

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		1.4
Translation
(A) 		0.1
Closure
(%) 		91.9
Bending Residues
( green ) 		  91 - 92
  99 - 100
  117 - 118
  133 - 134
  146 - 170
  178 - 179
  221 - 222
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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