Lysozyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lysozyme
  Conformer 1
(PDB) 		1jis (A)
  Conformer 2
(PDB) 		1jj3 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 100 0.33   3 - 45   53 - 57   60 - 63   69 - 73   76 - 78   85 - 124
2 22 0.33   46 - 52   58 - 59   64 - 68   74 - 75   79 - 84

Sequence


           _________________________________________43_______52___57____63___68________78____84____________________________________ 
 1jis(A) : KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDV 
         :                                                                                                                          
 1jj3(B) : KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDV 
           _________________________________________43_______52___57____63___68________78____84____________________________________ 

           _________                                                                                                                
 1jis(A) : QAWIRGCRL                                                                                                                
         :                                                                                                                          
 1jj3(B) : QAWIRGCRL                                                                                                                
           _________                                                                                                                

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.7
Translation
(A) 		0.0
Closure
(%) 		91.4
Bending Residues
( green ) 		  43 - 46
  52 - 53
  57 - 60
  63 - 64
  68 - 76
  78 - 79
  84 - 85
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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