M6a Binding Igg Fab, Heavy Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name M6a Binding Igg Fab, Heavy Chain
  Conformer 1
(PDB) 		8tca (H)
  Conformer 2
(PDB) 		8vev (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 118 0.45   3 - 120
2 90 1.59   121 - 216

Sequence


           ___________________________________________________________________________________________________________________118__ 
 8tca(H) : EVKLEESGGGLVQPGGSMKLSCVASGFSFTNYWMNWVRQSPEKGLEWVAEISLKSSNYVTYYAESVKGRFTISSDKSKRSVYLQMNNLRAEDTGIYFCSLWQTWFAYWGQGTLVTVSSAK 
         :                                                                                                                          
 8vev(A) : EVKLEESGGGLVQPGGSMKLSCVASGFSFTNYWMNWVRQSPEKGLEWVAEISLKSSNYVTYYAESVKGRFTISSDKSKRSVYLQMNNLRAEDTGIYFCSLWQTWFAYWGQGTLVTVSSAK 
           ___________________________________________________________________________________________________________________118__ 

           __________________________________________________________________________________________________                       
 8tca(H) : TTPPSVYPLAPGs------MVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR                       
         :                                                                                                                          
 8vev(A) : TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR                       
           __________________________________________________________________________________________________                       

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		32.6
Translation
(A) 		-0.5
Closure
(%) 		99.9
Bending Residues
( green ) 		  118 - 121
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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