Macrophage Mannose Receptor 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Macrophage Mannose Receptor 1
  Conformer 1
(PDB) 		6inv (A)
  Conformer 2
(PDB) 		6ioe (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 180 0.67   156 - 178   181 - 297   301 - 340
2 126 0.6   26 - 153   179 - 180
3 126 1.04   298 - 300   341 - 488

Sequence


           ________________________________________________________________________________________________________________________ 
 6inv(A) : **QFLIYNEDHKRCVDAVSPSAVQTAACNQDAESQKFRWVSESQIMSVAFKLCLGVPSKTDWVAITLYACDSKSEFQKWECKNDTLLGIKGEDLFFNYG----kNIMLYKGSGLWSRWKI 
         :                                                                                                                          
 6ioe(A) : TRQFLIYNEDHKRCVDAVSPSAVQTAACNQDAESQKFRWVSESQIMSVAFKLCLGVPSKTDWVAITLYACDSKSEFQKWECKNDTLLGIKGEDLFFNYGNRQEKNIMLYKGSGLWSRWKI 
           ________________________________________________________________________________________________________________________ 

           _________153______________________178___________________________________________________________________________________ 
 6inv(A) : YGTTDNLCSRGYEAMYTLLGNANGATCAFPFKFENKWYADCTSAGRSDGWLWCGTTTDYDTDKLFGYCPLKFEGSESLWNKDPLTSVSYQINSKSALTWHQARKSCQQQNAELLSITEIH 
         :                                                                                                                          
 6ioe(A) : YGTTDNLCSRGYEAMYTLLGNANGATCAFPFKFENKWYADCTSAGRSDGWLWCGTTTDYDTDKLFGYCPLKFEGSESLWNKDPLTSVSYQINSKSALTWHQARKSCQQQNAELLSITEIH 
           _________153______________________178___________________________________________________________________________________ 

           _________________________________297________________________________________340_________________________________________ 
 6inv(A) : EQTYLTGLTSSLTSGLWIGLNSLSFNSGWQWSDRSPFRYLNWLPGSPSAEPGKSCVSLNPGKNAKWENLECVQKLGYICKK----cPSQWWPYAGHCYKIHRDEKKIQRDALTTCRKEGG 
         :                                                                                                                          
 6ioe(A) : EQTYLTGLTSSLTSGLWIGLNSLSFNSGWQWSDRSPFRYLNWLPGSPSAEPGKSCVSLNPGKNAKWENLECVQKLGYICKKGNtHCPSQWWPYAGHCYKIHRDEKKIQRDALTTCRKEGG 
           _________________________________297________________________________________340_________________________________________ 

           ______________________________________________________________________________________________                           
 6inv(A) : DLTSIHTIEELDFIISQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLRGEPS------eDCVVMKGKDGYWADRGCEWPLGYICKMKS                           
         :                                                                                                                          
 6ioe(A) : DLTSIHTIEELDFIISQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLRGEPSHENNRQEDCVVMKGKDGYWADRGCEWPLGYICKMKS                           
           ______________________________________________________________________________________________                           

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.4
Translation
(A) 		0.2
Closure
(%) 		61.1
Bending Residues
( green ) 		  153 - 156
  178 - 181
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		15.4
Translation
(A) 		0.9
Closure
(%) 		100.0
Bending Residues
( green ) 		  297 - 298
  300 - 301
  340 - 341
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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