Maltose-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Maltose-Binding Periplasmic Protein
  Conformer 1
(PDB) 		1n3x (A)
  Conformer 2
(PDB) 		1nl5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 201 0.67   111 - 260   313 - 329   331 - 368
2 161 0.51   3 - 110   261 - 312   330 - 330

Sequence


           __________________________________________________________________________________________________________109___________ 
 1n3x(A) : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
         :                                                                                                                          
 1nl5(A) : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
           __________________________________________________________________________________________________________109___________ 

           ________________________________________________________________________________________________________________________ 
 1n3x(A) : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYGDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGV 
         :                                                                                                                          
 1nl5(A) : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYGDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGV 
           ________________________________________________________________________________________________________________________ 

           __________257_________________________________________________309______________326______________________________________ 
 1n3x(A) : TVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDA 
         :                                                                                                                          
 1nl5(A) : TVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATAENAAKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDA 
           __________257_________________________________________________309______________326______________________________________ 

           ______                                                                                                                   
 1n3x(A) : QTRITK                                                                                                                   
         :                                                                                                                          
 1nl5(A) : QTRITK                                                                                                                   
           ______                                                                                                                   

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		36.3
Translation
(A) 		-0.6
Closure
(%) 		99.4
Bending Residues
( green ) 		  109 - 113
  257 - 261
  309 - 315
  326 - 332
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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