Matrix Remodeling-Associated Protein 8

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Matrix Remodeling-Associated Protein 8
  Conformer 1
(PDB) 		6nk3 (A)
  Conformer 2
(PDB) 		6nk3 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 137 1.16   68 - 201   276 - 278
2 120 2.51   36 - 67   202 - 275   279 - 292

Sequence


           __________________________57____________________________________________________________________________________________ 
 6nk3(A) : **SSSLVSESVVSLAAGTQAVLRCQSPRMVWTQDRLHDRQRVVHWDLSGGPGSQRRRLVDMYSAGEQRVYEPRDRDRLLLSPSAFHDGNFSLLIRAVDRGDEGVYTCNLHHHYCHLDESL 
         :                                                                                                                          
 6nk3(B) : AASSSLVSESVVSLAAGTQAVLRCQSPRMVWTQDRLHDRQRVVHWDLSGGPGSQRRRLVDMYSAGEQRVYEPRDRDRLLLSPSAFHDGNFSLLIRAVDRGDEGVYTCNLHHHYCHLDESL 
           __________________________57____________________________________________________________________________________________ 

           ______________________________________________198_______________________________________________________________________ 
 6nk3(A) : AVRLEVTEDPLLSRAYWDGEKEVLVVAHGAPALMTCINRAHVWTDRHLEEAQQVVHWDRQLPGVSHDRADRLLDLYASGERRAYGPPFLRDRVSVNTNAFARGDFSLRIDELERADEGIY 
         :                                                                                                                          
 6nk3(B) : AVRLEVTEDPLLSRAYWDGEKEVLVVAHGAPALMTCINRAHVWTDRHLEEAQQVVHWDRQLPGVSHDRADRLLDLYASGERRAYGPPFLRDRVSVNTNAFARGDFSLRIDELERADEGIY 
           ______________________________________________198_______________________________________________________________________ 

           ___275___________________                                                                                                
 6nk3(A) : SCHLHHHYCGLHERRVFHLQVTEPA                                                                                                
         :                                                                                                                          
 6nk3(B) : SCHLHHHYCGLHERRVFHLQVTEPA                                                                                                
           ___275___________________                                                                                                

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		41.1
Translation
(A) 		1.7
Closure
(%) 		25.1
Bending Residues
( green ) 		  57 - 68
  198 - 202
  275 - 279
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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