Matrix Remodeling-Associated Protein 8

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Matrix Remodeling-Associated Protein 8
  Conformer 1
(PDB) 		6nk3 (A)
  Conformer 2
(PDB) 		6nk6 (M)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 132 0.85   62 - 193
2 127 1.57   34 - 61   194 - 292

Sequence


           ___________________________60___________________________________________________________________________________________ 
 6nk3(A) : SSSLVSESVVSLAAGTQAVLRCQSPRMVWTQDRLHDRQRVVHWDLSGGPGSQRRRLVDMYSAGEQRVYEPRDRDRLLLSPSAFHDGNFSLLIRAVDRGDEGVYTCNLHHHYCHLDESLAV 
         :                                                                                                                          
 6nk6(M) : SSSLVSESVVSLAAGTQAVLRCQSPRMVWTQDRLHDRQRVVHWDLSGGPGSQRRRLVDMYSAGEQRVYEPRDRDRLLLSPSAFHDGNFSLLIRAVDRGDEGVYTCNLHHHYCHLDESLAV 
           ___________________________60___________________________________________________________________________________________ 

           _______________________________________193______________________________________________________________________________ 
 6nk3(A) : RLEVTEDPLLSRAYWDGEKEVLVVAHGAPALMTCINRAHVWTDRHLEEAQQVVHWDRQLPGVSHDRADRLLDLYASGERRAYGPPFLRDRVSVNTNAFARGDFSLRIDELERADEGIYSC 
         :                                                                                                                          
 6nk6(M) : RLEVTEDPLLSRAYWDGEKEVLVVAHGAPALMTCINRAHVWTDRHLEEAQQVVHWDRQLPGVSHDRADRLLDLYASGERRAYGPPFLRDRVSVNTNAFARGDFSLRIDELERADEGIYSC 
           _______________________________________193______________________________________________________________________________ 

           _____________________________                                                                                            
 6nk3(A) : HLHHHYCGLHERRVFHLQVTEPA******                                                                                            
         :                                                                                                                          
 6nk6(M) : HLHHHYCGLHERRVFHLQVTEPAFEPPSA                                                                                            
           _____________________________                                                                                            

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.5
Translation
(A) 		-0.3
Closure
(%) 		96.3
Bending Residues
( green ) 		  60 - 64
  193 - 194
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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