DynDom - Protein Domain Motions

M32 Carboxypeptidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	M32 Carboxypeptidase
Conformer 1 (PDB)	1ka2 (A)
Conformer 2 (PDB)	1k9x (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	435	0.48	5 - 98 141 - 152 157 - 369 371 - 407 419 - 497
2	32	0.43	99 - 130
3	26	0.38	131 - 140 153 - 156 370 - 370 408 - 418

Sequence

`____________________________________________________________________________________________96__________________________` `1ka2(A) : EVFQNETIKQILAKYRRIWAIGHAQSVLGWDLEVNMPKEGILERSVAQGELSVLSHELLLHPEFVNLVEKAKGLENLNEYERGIVRVLDRSIRIARAFPPEFIREVSETTSLATKAWEEA` `:` `1k9x(B) : EVFQNETIKQILAKYRRIWAIGHAQSVLGWDLEVNMPKEGILERSVAQGELSVLSHELLLHPEFVNLVEKAKGLENLNEYERGIVRVLDRSIRIARAFPPEFIREVSETTSLATKAWEEA` `____________________________________________________________________________________________96__________________________` `_____130_______140_________152_156______________________________________________________________________________________` `1ka2(A) : KAKDDFSKFEPWLDKIISLAKRAAEYLGYEEEPYDALLDLYEEGLRTRDVEKMFEVLEKKLKPLLDKILEEGKVPREHPLEKEKYEREWMERVNLWILQKFGFPLGTRARLDVSAHPFTT` `:` `1k9x(B) : KAKDDFSKFEPWLDKIISLAKRAAEYLGYEEEPYDALLDLYEEGLRTRDVEKMFEVLEKKLKPLLDKILEEGKVPREHPLEKEKYEREWMERVNLWILQKFGFPLGTRARLDVSAHPFTT` `_____130_______140_________152_156______________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1ka2(A) : EFGIRDVRITTRYEGYDFRRTILSTVHEFGHALYELQQDERFMFTPIAGGVSLGIHESQSRFWENIIGRSKEFVELIYPVLKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYNFH` `:` `1k9x(B) : EFGIRDVRITTRYEGYDFRRTILSTVHEFGHALYELQQDERFMFTPIAGGVSLGIHESQSRFWENIIGRSKEFVELIYPVLKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYNFH` `________________________________________________________________________________________________________________________` `____369___________________________________407________418________________________________________________________________` `1ka2(A) : ILLRFKLERLMVSEEIKAKDLPEMWNDEMERLLGIRPRKYSEGILQDIHWAHGSIGYFPTYTIGTLLSAQLYYHIKKDIPDFEEKVAKAEFDPIKAWLREKIHRWGSIYPPKELLKKAIG` `:` `1k9x(B) : ILLRFKLERLMVSEEIKAKDLPEMWNDEMERLLGIRPRKYSEGILQDIHWAHGSIGYFPTYTIGTLLSAQLYYHIKKDIPDFEEKVAKAEFDPIKAWLREKIHRWGSIYPPKELLKKAIG` `____369___________________________________407________418________________________________________________________________` `_________________` `1ka2(A) : EDMDAEYFVRWVKEKYL` `:` `1k9x(B) : EDMDAEYFVRWVKEKYL` `_________________`

Morph

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Status: Initialising

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Domain Pairs

Fixed Domain	Moving Domain	Rotation Angle	Translation (A)	Closure	Bending Residues
1	2	8.9	0.4	92.5	96 - 99	Bending Region Analysis
1	3	4.3	0.0	99.1	140 - 141 152 - 153 156 - 157 369 - 371 407 - 408 418 - 419	Bending Region Analysis
3	2	5.5	0.1	41.7	130 - 131	Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PANTOTHENATE KINASE

PyMOL Script

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