Nucleotidyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nucleotidyltransferase
  Conformer 1
(PDB) 		8yss (A)
  Conformer 2
(PDB) 		8ysg (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 169 0.82   6 - 17   22 - 25   67 - 67   69 - 71   164 - 270   276 - 328
2 142 0.54   18 - 21   26 - 66   68 - 68   72 - 163   271 - 275

Sequence


           ______________17__21__25______________________________________66____71__________________________________________________ 
 8yss(A) : APVQKQFREFHDRIKLAQYDENQTLRDERDAVLTAVREGLKKVFADRGEAAPTFTPFNQGSYA-nTGVKPLEGGEYDIDVGIILNIAKDDHDPVEVKKWIRDALKDYGNGAEIRRSCVTV 
         :                                                                                                                          
 8ysg(A) : **VQKQFREFHDRIKLAQYDENQTLRDERDAVLTAVREGLKKVFADRGEAAPTFTPFNQGSYAMNTGVKPLEGGEYDIDVGIILNIAKDDHDPVEVKKWIRDALKDYGNGAEIRRSCVTV 
           ______________17__21__25______________________________________66____71__________________________________________________ 

           _______________________________________163______________________________________________________________________________ 
 8yss(A) : FKPGYHVDLAVYADPELSGGTLCIAKGKENSGDEHRLWQISDPQGFQDRIASKLSGDDAAQFRRCIRYLKRWRDFRFSSDGNAAPLGIGLTAAAYWWFQVSKRTDPVSQNVTYDDRDALE 
         :                                                                                                                          
 8ysg(A) : FKPGYHVDLAVYADPELSGGTLCIAKGKENSGDEHRLWQISDPQGFQDRIASKLSGDDAAQFRRCIRYLKRWRDFRF-------pLGIGLTAAAYWWFQVSKRTDPVSQNVTYDDRDALE 
           _______________________________________163______________________________________________________________________________ 

           __________________________270__275________________________________________________________                               
 8yss(A) : QFVQT-lDNFHDTWDSKDQRSYPRLTVELPVQPYNDVFEK-tGq--eSFKSKLQALLNALKTAKSRLELHDACKALADHFGSEFPVPEKD                               
         :                                                                                                                          
 8ysg(A) : QFVQTMLDNFHDTWDSKDQRSYPRLTVELPVQPYNDVFEKMTGMQMESFKSKLQALLNALKTAKSRLELHDACKALADHFGSEFPVPEK*                               
           __________________________270__275________________________________________________________                               

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.5
Translation
(A) 		-0.1
Closure
(%) 		97.0
Bending Residues
( green ) 		  17 - 18
  21 - 22
  25 - 26
  66 - 69
  71 - 72
  163 - 164
  270 - 271
  275 - 276
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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