Osmoprotection Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Osmoprotection Protein
  Conformer 1
(PDB) 		8dp6 (A)
  Conformer 2
(PDB) 		8dp7 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 158 0.67   291 - 388   492 - 551
2 103 0.5   389 - 491

Sequence


           __________________________________________________________________________________________________387___________________ 
 8dp6(A) : EKPLVVATKPSSEQYILGEILSLLLEKHHIPIKRAFGIGGGTMNIHPALIRGDFDLYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQKYAIET 
         :                                                                                                                          
 8dp7(A) : **PLVVATKPSSEQYILGEILSLLLEKHHIPIKRAFGIGGGTMNIHPALIRGDFDLYVEYTGTAWVNTLKNPLTQKVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKEDAQKYAIET 
           __________________________________________________________________________________________________387___________________ 

           _________________________________________________________________________________490____________________________________ 
 8dp6(A) : FSDLAFHSPNFDFGAEFDFFEREDAFKGLMKAYRFHFRSLHEMDINLRYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFFPNYQAGIVIRKETIKKYPEALKILEKLDSKINDETM 
         :                                                                                                                          
 8dp7(A) : FSDLAFHSPNFDFGAEFDFFEREDAFKGLMKAYRFHFRSLHEMDINLRYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFFPNYQAGIVIRKETIKKYPEALKILEKLDSKINDETM 
           _________________________________________________________________________________490____________________________________ 

           ___________________________                                                                                              
 8dp6(A) : QDLNYQVEVLKKSPKIVAKDFLERLGL                                                                                              
         :                                                                                                                          
 8dp7(A) : QDLNYQVEVLKKSPKIVAKDFLERLGL                                                                                              
           ___________________________                                                                                              

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		48.4
Translation
(A) 		-0.2
Closure
(%) 		99.4
Bending Residues
( green ) 		  387 - 390
  490 - 493
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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