Phosphoglycerate Kinase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoglycerate Kinase 1
  Conformer 1
(PDB) 		5m1r (A)
  Conformer 2
(PDB) 		2xe6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 255 0.59   132 - 149   163 - 177   187 - 408
2 154 0.42   6 - 131   150 - 162   178 - 186   409 - 414

Sequence


           ________________________________________________________________________________________________________________________ 
 5m1r(A) : SLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLEN 
         :                                                                                                                          
 2xe6(A) : ***NKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLEN 
           ________________________________________________________________________________________________________________________ 

           ________131_______________149__________162____________177______186______________________________________________________ 
 5m1r(A) : LRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFDTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMA 
         :                                                                                                                          
 2xe6(A) : LRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMA 
           ________131_______________149__________162____________177______186______________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5m1r(A) : FTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVK 
         :                                                                                                                          
 2xe6(A) : FTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVK 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________408________                                                                 
 5m1r(A) : ATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNI                                                                 
         :                                                                                                                          
 2xe6(A) : ATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNI                                                                 
           _____________________________________________408________                                                                 

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.6
Translation
(A) 		-0.4
Closure
(%) 		94.4
Bending Residues
( green ) 		  131 - 137
  149 - 150
  162 - 163
  177 - 178
  186 - 187
  408 - 414
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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