Phosphoribosylglycinamide Formyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoribosylglycinamide Formyltransferase
  Conformer 1
(PDB) 		1mej (A)
  Conformer 2
(PDB) 		1meo (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 99 0.87   3 - 14   20 - 24   30 - 105   140 - 148
2 94 0.56   15 - 19   25 - 29   106 - 139   149 - 198

Sequence


           ___________12_____19___24_27___________________________________________________________________________105______________ 
 1mej(A) : RILVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSN 
         :                                                                                                                          
 1meo(A) : *ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSN 
           ___________12_____19___24_27___________________________________________________________________________105______________ 

           ________________138___________________________________________________________________                                   
 1mej(A) : AHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWV*****                                   
         :                                                                                                                          
 1meo(A) : AHEQALETGVTVTGCTVHFVAE---aGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWVKEEHH                                   
           ________________138___________________________________________________________________                                   

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.5
Translation
(A) 		0.3
Closure
(%) 		98.6
Bending Residues
( green ) 		  12 - 15
  19 - 20
  24 - 25
  27 - 30
  105 - 106
  138 - 149
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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