Protein (Pectate Lyase)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Pectate Lyase)
  Conformer 1
(PDB) 		1bn8 (A)
  Conformer 2
(PDB) 		2bsp (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 319 0.27   3 - 72   77 - 79   115 - 163   184 - 205   223 - 397
2 76 0.29   73 - 76   80 - 114   164 - 183   206 - 222

Sequence


           __________________________________________________________________68_________79________________________________114______ 
 1bn8(A) : ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKAR 
         :                                                                                                                          
 2bsp(A) : ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKAR 
           __________________________________________________________________68_________79________________________________114______ 

           ________________________________________163_________________183___________________205______________222__________________ 
 1bn8(A) : VMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 
         :                                                                                                                          
 2bsp(A) : VMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 
           ________________________________________163_________________183___________________205______________222__________________ 

           ________________________________________________________________________________________________________________________ 
 1bn8(A) : YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINAS 
         :                                                                                                                          
 2bsp(A) : YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQKAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINAS 
           ________________________________________________________________________________________________________________________ 

           _______________________________________                                                                                  
 1bn8(A) : AANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN                                                                                  
         :                                                                                                                          
 2bsp(A) : AANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN                                                                                  
           _______________________________________                                                                                  

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.9
Translation
(A) 		0.1
Closure
(%) 		53.2
Bending Residues
( green ) 		  68 - 77
  79 - 80
  114 - 116
  163 - 164
  183 - 184
  205 - 206
  222 - 223
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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