Putative Laminarinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Laminarinase
  Conformer 1
(PDB) 		2cl2 (A)
  Conformer 2
(PDB) 		2wlq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 218 0.16   3 - 21   33 - 35   39 - 40   46 - 51   72 - 251   289 - 296
2 76 0.15   22 - 32   36 - 38   41 - 45   52 - 71   252 - 288

Sequence


           ___________________21_________32___________45____51__________________71_________________________________________________ 
 2cl2(A) : ATYHLEDNWVGSAFLSTFTHEAIADPTHGRVNYVDQATALAKNLTYASGDTLILRADHTTTLSPSGPGRNSVRIRSIKTYTTHVAVFDVRHMPQGCGTWPAAWETDEGDWPNGGEVDIIE 
         :                                                                                                                          
 2wlq(A) : ATYHLEDNWVGSAFLSTFTHEAIADPTHGRVNYVDQATALAKNLTYASGDTLILRADHTTTLSPSGPGRNSVRIRSIKTYTTHVAVFDVRHMPQGCGTWPAAWETDEGDWPNGGSVDIIE 
           ___________________21_________32___________45____51__________________71_________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2cl2(A) : GVNDQSPNAMTLHTGANCAMPASRTMTGHATNNNCDVNTDGNTGCGVQAPTANSYGPSFNANGGGWYAMERTNSFIKVWFFPRNAGNVPNDIASGPATINTDNWGTPTAFFPNTNCDIGS 
         :                                                                                                                          
 2wlq(A) : GVNDQSPNAMTLHTGANCAMPASRTMTGHATNNNCDVNTDGNTGCGVQAPTANSYGPSFNANGGGWYAMERTNSFIKVWFFPRNAGNVPNDIASGPATINTDNWGTPTAFFPNTNCDIGS 
           ________________________________________________________________________________________________________________________ 

           ________251__________________________________288__________                                                               
 2cl2(A) : HFDANNIIINLTFCGDWAGQASIFNGAGCPGSCVDYVNNNPSAFANAYWDIASVRVYQ                                                               
         :                                                                                                                          
 2wlq(A) : HFDANNIIINLTFCGDWAGQASIFNGAGCPGSCVDYVNNNPSAFANAYWDIASVRVYQ                                                               
           ________251__________________________________288__________                                                               

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		1.6
Translation
(A) 		-0.1
Closure
(%) 		76.4
Bending Residues
( green ) 		  21 - 22
  32 - 41
  45 - 46
  51 - 52
  71 - 72
  251 - 252
  288 - 289
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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