Putative Laminarinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Laminarinase
  Conformer 1
(PDB) 		2cl2 (A)
  Conformer 2
(PDB) 		2wne (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 202 0.17   3 - 18   33 - 36   48 - 51   73 - 91   93 - 94   99 - 249   291 - 296
2 92 0.17   19 - 32   37 - 47   52 - 72   92 - 92   95 - 98   250 - 290

Sequence


           ________________18____________32_____________47__51___________________72_________________91_____98______________________ 
 2cl2(A) : ATYHLEDNWVGSAFLSTFTHEAIADPTHGRVNYVDQATALAKNLTYASGDTLILRADHTTTLSPSGPGRNSVRIRSIKTYTTHVAVFDVRHMPQGCGTWPAAWETDEGDWPNGGEVDIIE 
         :                                                                                                                          
 2wne(A) : ATYHLEDNWVGSAFLSTFTHEAIADPTHGRVNYVDQATALAKNLTYASGDTLILRADHTTTLSPSGPGRNSVRIRSIKTYTTHVAVFDVRHMPQGCGTWPAAWETDEGDWPNGGSVDIIE 
           ________________18____________32_____________47__51___________________72_________________91_____98______________________ 

           ________________________________________________________________________________________________________________________ 
 2cl2(A) : GVNDQSPNAMTLHTGANCAMPASRTMTGHATNNNCDVNTDGNTGCGVQAPTANSYGPSFNANGGGWYAMERTNSFIKVWFFPRNAGNVPNDIASGPATINTDNWGTPTAFFPNTNCDIGS 
         :                                                                                                                          
 2wne(A) : GVNDQSPNAMTLHTGANCAMPASRTMTGHATNNNCDVNTDGNTGCGVQAPTANSYGPSFNANGGGWYAMERTNSFIKVWFFPRNAGNVPNDIASGPATINTDNWGTPTAFFPNTNCDIGS 
           ________________________________________________________________________________________________________________________ 

           ______249______________________________________290________                                                               
 2cl2(A) : HFDANNIIINLTFCGDWAGQASIFNGAGCPGSCVDYVNNNPSAFANAYWDIASVRVYQ                                                               
         :                                                                                                                          
 2wne(A) : HFDANNIIINLTFCGDWAGQASIFNGAGCPGSCVDYVNNNPSAFANAYWDIASVRVYQ                                                               
           ______249______________________________________290________                                                               

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		1.7
Translation
(A) 		-0.1
Closure
(%) 		75.8
Bending Residues
( green ) 		  18 - 20
  32 - 38
  47 - 48
  51 - 52
  72 - 73
  91 - 95
  98 - 99
  249 - 250
  290 - 291
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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