Putative Hemin Transport System, Substrate-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Hemin Transport System, Substrate-Binding Protein
  Conformer 1
(PDB) 		5giz (A)
  Conformer 2
(PDB) 		5y89 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 164 1.55   131 - 142   144 - 144   152 - 153   155 - 303
2 99 0.98   41 - 130   143 - 143   145 - 151   154 - 154

Sequence


           _____________________________________________________________________________________________130_________142______151___ 
 5giz(A) : GPLGSKRVIVIGGALAETAFALGGAETPRYRLVGADTTCTYPDAAKRLPKVGYQRALSAEGLLSLRPDLVLASAEAGPPTAIAQVKGAGVTVTTFDERHDVESVRAKITGVAQALDVRDA 
         :                                                                                                                          
 5y89(A) : ****SKRVIVIGGALAETAFALGGAETPRYRLVGADTTCTYPDAAKRLPKVGYQRALSAEGLLSLRPDLVLASAEAGPPTAIAQVKGAGVTVTTFDERHDVESVRAKITGVAQALDVRDA 
           _____________________________________________________________________________________________130_________142______151___ 

           ________________________________________________________________________________________________________________________ 
 5giz(A) : GAALLQRFDRDWQAARDAVAARVPGGAQPPRVLFVLNHTGTQALVAGQRTAADAMIRYAGARNAMQGFDHYKPLTTEALAAAAPDVVLISDEGLAAVGGHAALLATPGFGATPAGRARRV 
         :                                                                                                                          
 5y89(A) : GAALLQRFDRDWQAARDAVAARVPGGAQPPRVLFVLNHTGTQALVAGQRTAADAMIRYAGARNAMQGFDHYKPLTTEALAAAAPDVVLISDEGLAAVGGHAALLATPGFGATPAGRARRV 
           ________________________________________________________________________________________________________________________ 

           _______________________________                                                                                          
 5giz(A) : VSLDALFLLGFGPRLPLAVTTLHRRLSDALA                                                                                          
         :                                                                                                                          
 5y89(A) : VSLDALFLLGFGPRLPLAVTTLHRRLSDALA                                                                                          
           _______________________________                                                                                          

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.8
Translation
(A) 		0.3
Closure
(%) 		87.9
Bending Residues
( green ) 		  130 - 131
  142 - 145
  151 - 155
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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