Putative Hemin Transport System, Substrate-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Hemin Transport System, Substrate-Binding Protein
  Conformer 1
(PDB) 		5giz (A)
  Conformer 2
(PDB) 		5y8a (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 135 0.42   40 - 170   289 - 292
2 127 0.61   171 - 288   293 - 301

Sequence


           ________________________________________________________________________________________________________________________ 
 5giz(A) : GPLGSKRVIVIGGALAETAFALGGAETPRYRLVGADTTCTYPDAAKRLPKVGYQRALSAEGLLSLRPDLVLASAEAGPPTAIAQVKGAGVTVTTFDERHDVESVRAKITGVAQALDVRDA 
         :                                                                                                                          
 5y8a(A) : ***GSKRVIVIGGALAETAFALGGAETPRYRLVGADTTCTYPDAAKRLPKVGYQRALSAEGLLSLRPDLVLASAEAGPPTAIAQVKGAGVTVTTFDERHDVESVRAKITGVAQALDVRDA 
           ________________________________________________________________________________________________________________________ 

           _____________170________________________________________________________________________________________________________ 
 5giz(A) : GAALLQRFDRDWQAARDAVAARVPGGAQPPRVLFVLNHTGTQALVAGQRTAADAMIRYAGARNAMQGFDHYKPLTTEALAAAAPDVVLISDEGLAAVGGHAALLATPGFGATPAGRARRV 
         :                                                                                                                          
 5y8a(A) : GAALLQRFDRDWQAARDAVAARVPGGAQPPRVLFVLNHTGTQALVAGQRTAADAMIRYAGARNAMQGFDHYKPLTTEALAAAAPDVVLISDEGLAAVGGHAALLATPGFGATPAGRARRV 
           _____________170________________________________________________________________________________________________________ 

           ___________288_292_____________                                                                                          
 5giz(A) : VSLDALFLLGFGPRLPLAVTTLHRRLSDALA                                                                                          
         :                                                                                                                          
 5y8a(A) : VSLDALFLLGFGPRLPLAVTTLHRRLSDALA                                                                                          
           ___________288_292_____________                                                                                          

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.7
Translation
(A) 		-0.1
Closure
(%) 		45.6
Bending Residues
( green ) 		  170 - 171
  288 - 289
  292 - 293
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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