Ribokinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ribokinase
  Conformer 1
(PDB) 		5byf (A)
  Conformer 2
(PDB) 		5byc (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 271 0.36   15 - 26   47 - 107   126 - 323
2 38 0.3   27 - 46   108 - 125

Sequence


           ______________26__________________46__________________________________________________________107_______________125_____ 
 5byf(A) : **EEVAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLL 
         :                                                                                                                          
 5byc(B) : WQEEVAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLL 
           ______________26__________________46__________________________________________________________107_______________125_____ 

           ________________________________________________________________________________________________________________________ 
 5byf(A) : LNTEDLRAAANVISRAKVMVCQLEITPATSLEALTMARRSGVKTLFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPE 
         :                                                                                                                          
 5byc(B) : LNTEDLRAAANVISRAKVMVCQLEITPATSLEALTMARRSGVKTLFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPE 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________                                             
 5byf(A) : PKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNLSLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLPLTLFLEH*                                             
         :                                                                                                                          
 5byc(B) : PKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNLSLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLPLTLFLEHH                                             
           ____________________________________________________________________________                                             

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.8
Translation
(A) 		0.0
Closure
(%) 		56.2
Bending Residues
( green ) 		  26 - 27
  46 - 48
  107 - 108
  125 - 126
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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