Ribokinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ribokinase
  Conformer 1
(PDB) 		5byf (A)
  Conformer 2
(PDB) 		6wk0 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 264 0.46   16 - 25   52 - 107   125 - 322
2 43 0.33   26 - 51   108 - 124

Sequence


           ___________25________________________51_____________________________________________________107______________124________ 
 5byf(A) : EEVAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLLN 
         :                                                                                                                          
 6wk0(B) : *EVAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLLN 
           ___________25________________________51_____________________________________________________107______________124________ 

           ________________________________________________________________________________________________________________________ 
 5byf(A) : TEDLRAAANVISRAKVMVCQLEITPATSLEALTMARRSGVKTLFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEPK 
         :                                                                                                                          
 6wk0(B) : TEDLRAAANVISRAKVMVCQLEITPATSLEALTMARRSGVKTLFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEPK 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________                                                
 5byf(A) : HIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNLSLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLPLTLFLEH                                                
         :                                                                                                                          
 6wk0(B) : HIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNLSLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLPLTLFLE*                                                
           _________________________________________________________________________                                                

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		16.7
Translation
(A) 		0.0
Closure
(%) 		99.9
Bending Residues
( green ) 		  25 - 26
  51 - 52
  107 - 108
  124 - 125
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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