Ryanodine Receptor 1 Chimera

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ryanodine Receptor 1 Chimera
  Conformer 1
(PDB) 		6uhs (A)
  Conformer 2
(PDB) 		6uhi (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 104 2.02   10 - 28   78 - 97   133 - 211
2 60 1.33   29 - 77   98 - 132

Sequence


           ___________________28______________________________________________76_________________97___________129__________________ 
 6uhs(A) : *YIPEPdLSLVDLPESLIQLSERIAENVHEVWAKARIDEGWTYGEKRDDIHKKHPCLVPYDELPEEEKEYDRNTAnTIKvKKLGFRIEKEeNKLDYIPEPdLSLVDLPESLIQLSERIAE 
         :                                                                                                                          
 6uhi(A) : DYIPEPdLSLVDLPESLIQLSERIAENVHEVWAKARIDEGWTYGEKRDDIHKKHPCLVPYDELPEEEKEYDRNTAnTIKvKKLGFRIEKE------iPEPdLSLVDLPESLIQLSERIAE 
           ___________________28______________________________________________76_________________97___________129__________________ 

           _________________________________________________________________                                                        
 6uhs(A) : NVHEVWAKARIDEGWTY---------kHPCLVPYDELPEEEKEYDRNTAnTIKvKKLGFRIEKE*                                                        
         :                                                                                                                          
 6uhi(A) : NVHEVWAKARIDEGWTYGEKRDDIHKKHPCLVPYDELPEEEKEYDRNTAnTIKvKKLGFRIEKED                                                        
           _________________________________________________________________                                                        

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		26.0
Translation
(A) 		0.7
Closure
(%) 		92.8
Bending Residues
( green ) 		  28 - 30
  76 - 79
  97 - 98
  129 - 133
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download