Succinyl-Coa Ligase [Gdp-Forming] Alpha-Chain, Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Succinyl-Coa Ligase [Gdp-Forming] Alpha-Chain, Mitochondrial
  Conformer 1
(PDB) 		2fp4 (A)
  Conformer 2
(PDB) 		7jfp (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 268 0.71   9 - 249   273 - 299
2 20 6.03   250 - 272

Sequence


           ________________________________________________________________________________________________________________________ 
 2fp4(A) : SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLR 
         :                                                                                                                          
 7jfp(A) : SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2fp4(A) : QGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKP 
         :                                                                                                                          
 7jfp(A) : QGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKP 
           ________________________________________________________________________________________________________________________ 

           ____248_____________________272__________________________________                                                        
 2fp4(A) : VVSFIAGLTAPPGRRMG-aGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKML                                                        
         :                                                                                                                          
 7jfp(A) : VVSFIAGLTAPPGRRMGHAGAIIAG--gGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKML                                                        
           ____248_____________________272__________________________________                                                        

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		53.4
Translation
(A) 		-1.1
Closure
(%) 		58.6
Bending Residues
( green ) 		  248 - 250
  272 - 275
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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