Succinyl-Coa Synthetase Alpha Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Succinyl-Coa Synthetase Alpha Subunit
  Conformer 1
(PDB) 		1jkj (A)
  Conformer 2
(PDB) 		7jfp (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 251 0.92   8 - 236   259 - 280
2 20 6.27   237 - 258

Sequence


           ________________________________________________________________________________________________________________________ 
 1jkj(A) : *******SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDE 
         :                                                                                                                          
 7jfp(A) : SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1jkj(A) : AG-VRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT----KP 
         :                                                                                                                          
 7jfp(A) : QGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKP 
           ________________________________________________________________________________________________________________________ 

           _232______________________258____________________________________                                                        
 1jkj(A) : VVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVL******                                                        
         :                                                                                                                          
 7jfp(A) : VVSFIAGLTAPPGRRMGHAGAIIAGg-G-AKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKML                                                        
           _245______________________271____________________________________                                                        

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		69.6
Translation
(A) 		-1.5
Closure
(%) 		64.6
Bending Residues
( green ) 		  232 - 237
  258 - 266
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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