Thermostable Lipase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Thermostable Lipase
  Conformer 1
(PDB) 		2dsn (B)
  Conformer 2
(PDB) 		7ey3 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 358 0.31   8 - 18   29 - 194   205 - 385
2 20 0.22   19 - 28   195 - 204

Sequence


           _______________18________28_____________________________________________________________________________________________ 
 2dsn(B) : SLRANDAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDRACEAYAQLVGGTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARM 
         :                                                                                                                          
 7ey3(A) : CLRANDAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDRACEAYAQLVGGTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARM 
           _______________18________28_____________________________________________________________________________________________ 

           ______________________________________________________________________194_______204_____________________________________ 
 2dsn(B) : LVSLLENGSQEEREYAKAHNVSLSPLFEGGHHFVLSVTTIATPHDGTTLVNMVDFTDRFFDLQKAVLEAAAVASNVPYTSQVYDFKLDQWGLRRQPGESFDHYFERLKRSPVWTSTDTAR 
         :                                                                                                                          
 7ey3(A) : LVSLLENGSQEEREYAKAHNVSLSPLFEGGHHFVLSVTTIATPHDGTTLVNMVDFTDRFFDLQKAVLEAAAVASNVPYTSQVYDFKLDQWGLRRQPGESFDHYFERLKRSPVWTSTDTAR 
           ______________________________________________________________________194_______204_____________________________________ 

           ________________________________________________________________________________________________________________________ 
 2dsn(B) : YDLSVSGAEKLNQWVQASPNTYYLSFSTERTYRGALTGNHYPELGMNAFSAVVCAPFLGSYRNPTLGIDDRWLENDGIVNTVSMNGPKRGSSDRIVPYDGTLKKGVWNDMGTYNVDHLEI 
         :                                                                                                                          
 7ey3(A) : YDLSVSGAEKLNQWVQASPNTYYLSFSTERTYRGALTGNHYPELGMNAFSAVVCAPFLGSYRNPTLGIDDRWLENDGIVNTVSMNGPKRGSSDRIVPYDGTLKKGVWNDMGTYNVDHLEI 
           ________________________________________________________________________________________________________________________ 

           ___________________________                                                                                              
 2dsn(B) : IGVDPNPSFDIRAFYLRLAEQLASLQP                                                                                              
         :                                                                                                                          
 7ey3(A) : IGVDPNPSFDIRAFYLRLAEQLCSLQP                                                                                              
           ___________________________                                                                                              

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.4
Translation
(A) 		-0.1
Closure
(%) 		88.1
Bending Residues
( green ) 		  18 - 19
  28 - 29
  194 - 195
  204 - 205
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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