T4 Lysozyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name T4 Lysozyme
  Conformer 1
(PDB) 		172l (A)
  Conformer 2
(PDB) 		215l (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 97 0.75   3 - 11   73 - 160
2 61 0.47   12 - 72

Sequence


           ________9____________________________________________________________71_________________________________________________ 
 172l(A) : MNCFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFT-NSLR 
         :                                                                                                                          
 215l(A) : MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTANSLR 
           ________9____________________________________________________________71_________________________________________________ 

           _____________________________________________                                                                            
 172l(A) : MLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKNL                                                                            
         :                                                                                                                          
 215l(A) : MLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYK**                                                                            
           _____________________________________________                                                                            

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		39.2
Translation
(A) 		-1.7
Closure
(%) 		93.2
Bending Residues
( green ) 		  9 - 13
  71 - 75
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download