T4 Lysozyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name T4 Lysozyme
  Conformer 1
(PDB) 		172l (A)
  Conformer 2
(PDB) 		218l (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 100 2.03   3 - 12   71 - 160
2 58 0.37   13 - 70

Sequence


           __________12_______________________________________________________69___________________________________________________ 
 172l(A) : MNCFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRM 
         :                                                                                                                          
 218l(A) : MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRM 
           __________12_______________________________________________________69___________________________________________________ 

           _____________________________________________                                                                            
 172l(A) : LQQKRWDEAAV-NLAKSRWYNQTPNRAKRVITTFRTGTWDAYKNL                                                                            
         :                                                                                                                          
 218l(A) : LQQKRWDEAAVANLAKSRWYNQTPNRAKRVITTFRTGTWDAYK**                                                                            
           _____________________________________________                                                                            

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		21.7
Translation
(A) 		-0.7
Closure
(%) 		97.3
Bending Residues
( green ) 		  12 - 13
  69 - 71
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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