T4 Lysozyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name T4 Lysozyme
  Conformer 1
(PDB) 		212l (A)
  Conformer 2
(PDB) 		216l (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 95 0.35   3 - 12   75 - 159
2 62 0.37   13 - 74

Sequence


           __________12____________________________________________________________74______________________________________________ 
 212l(A) : MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRM 
         :                                                                                                                          
 216l(A) : MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKWELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRM 
           __________12____________________________________________________________74______________________________________________ 

           ________________________________________________                                                                         
 212l(A) : LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKNLAAAA                                                                         
         :                                                                                                                          
 216l(A) : LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYK******                                                                         
           ________________________________________________                                                                         

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.7
Translation
(A) 		-0.2
Closure
(%) 		63.3
Bending Residues
( green ) 		  12 - 13
  74 - 75
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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