Viral Chitosanase V-Csn

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Viral Chitosanase V-Csn
  Conformer 1
(PDB) 		7tvl (A)
  Conformer 2
(PDB) 		7tvn (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 193 0.1   3 - 52   79 - 221
2 26 0.09   53 - 78

Sequence


           _____________________________________________________52________________________78_______________________________________ 
 7tvl(A) : GSHMSELSEIDSVAGVTIYSVDGEPKSFVYKAGFAIDADGAPNAYAPNNGGTDFTANGGDDQGGDWWGGPVDAEGYPIKQKIFDPFPGYYVSATAHFNPAYSEDSPYRYIDSNSIPFIVL 
         :                                                                                                                          
 7tvn(A) : **HMSELSEIDSVAGVTIYSVDGEPKSFVYKAGFAIDADGAPNAYAPNNGGTDFTANGGDDQGGDWWGGPVDAEGYPIKQKIFDPFPGYYVSATAHFNPAYSEDSPYRYIDSNSIPFIVL 
           _____________________________________________________52________________________78_______________________________________ 

           ___________________________________________________________________________________________________________              
 7tvl(A) : PGNHSNGAKLGDVALVYNEKTGDNCYAIYGDVGPSSKIGEGSVRLAQALKIDDNPKAGGTESRIVVTLVFPGSVGKWETPKRWFSHANQLTKAWGGLSRLKTLSDQL              
         :                                                                                                                          
 7tvn(A) : PGNHSNGAKLGDVALVYNEKTGDNCYAIYGNVGPSSKIGEGSVRLAQALKIDDNPKAGGTESRIVVTLVFPGSVGKWETPKRWFSHANQLTKAWGGLSRLKTLSDQL              
           ___________________________________________________________________________________________________________              

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		1.3
Translation
(A) 		0.0
Closure
(%) 		95.7
Bending Residues
( green ) 		  52 - 55
  78 - 79
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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