Vkorc1/thioredoxin Domain Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Vkorc1/thioredoxin Domain Protein
  Conformer 1
(PDB) 		3kp9 (A)
  Conformer 2
(PDB) 		4nv5 (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 151 1.2   21 - 44   61 - 190
2 88 1.04   58 - 60   191 - 275

Sequence


           ________________________41______________________________________________________________________________________________ 
 3kp9(A) : QRHSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGsDLVLSSRWAEFLGIPTAAVGLLGFLGVLALAVLP-lPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLRQFCMYCTTAIIL 
         :                                                                                                                          
 4nv5(A) : *RHSRLILAILAGLGSLLTAYLTYTKLTEQPAA--gGCDLVLSSRWAEFLGIPTAAVGLLGFLGVLALAVLPDlPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLRQFCMYCTTAIIL 
           ________________________41______________________________________________________________________________________________ 

           ________________________________________________190_____________________________________________________________________ 
 3kp9(A) : VAGLGLVTVLGHRWLDGGKLAFSYILVAFLTLVTTIGVYANQVPPPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWIING 
         :                                                                                                                          
 4nv5(A) : VAGLGLVTVLGHRWL-gGKLAFSYILVAFLTLVTTIGVYANQVPPPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWIING 
           ________________________________________________190_____________________________________________________________________ 

           _______________________                                                                                                  
 3kp9(A) : RTYTGVRSLEALAVASGYPL***                                                                                                  
         :                                                                                                                          
 4nv5(A) : RTYTGVRSLEALAVASGYPLEEG                                                                                                  
           _______________________                                                                                                  

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.7
Translation
(A) 		-2.1
Closure
(%) 		60.5
Bending Residues
( green ) 		  41 - 61
  190 - 191
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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