Vkorc1/thioredoxin Domain Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Vkorc1/thioredoxin Domain Protein
  Conformer 1
(PDB) 		3kp9 (A)
  Conformer 2
(PDB) 		4nv2 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 140 1.0   19 - 42   62 - 179
2 103 1.31   57 - 61   180 - 277

Sequence


           _________________________42_________________61__________________________________________________________________________ 
 3kp9(A) : QRHSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGs---DLVLSSRWAEFLGIPTAAVGLLGFLGVLALAVLPlPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLRQFCMYCTTAI 
         :                                                                                                                          
 4nv2(A) : *RHSRLILAILAGLGSLLTAYLTYTKLTEQPAAFATGDGGCDLVLSSRWAEFLGIPTAAVGLLGFLGVLALAVLPDpLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLRQFCMYCTTAI 
           _________________________42_________________61__________________________________________________________________________ 

           _______________________________________179______________________________________________________________________________ 
 3kp9(A) : ILVAGLGLVTVLGHRWLDGGKLAFSYILVAFLTLVTTIGVYANQVPPPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWII 
         :                                                                                                                          
 4nv2(A) : ILVAGLGLVTVLGHRWLDGGKLAFSYILVAFLTLVTTIGVYANQVPPPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWII 
           _______________________________________179______________________________________________________________________________ 

           _________________________                                                                                                
 3kp9(A) : NGRTYTGVRSLEALAVASGYPL***                                                                                                
         :                                                                                                                          
 4nv2(A) : NGRTYTGVRSLEALAVASGYPLEEG                                                                                                
           _________________________                                                                                                

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.3
Translation
(A) 		-1.7
Closure
(%) 		92.6
Bending Residues
( green ) 		  42 - 58
  61 - 62
  179 - 180
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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