X-31 Influenza Haemagglutinin Ha1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name X-31 Influenza Haemagglutinin Ha1
  Conformer 1
(PDB) 		6y5g (A)
  Conformer 2
(PDB) 		6y5k (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 273 0.38   46 - 318
2 29 1.2   18 - 45   319 - 319

Sequence


           ____________________________________45__________________________________________________________________________________ 
 6y5g(A) : NSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTW 
         :                                                                                                                          
 6y5k(A) : ******CLGHHAVPNGTLVKTITDDQIEVTNATELVQSSSTGKICNNPHRILDGIDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEGFTW 
           ____________________________________45__________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6y5g(A) : TGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINS 
         :                                                                                                                          
 6y5k(A) : TGVTQNGGSNACKRGPGSGFFSRLNWLTKSGSTYPVLNVTMPNNDNFDKLYIWGIHHPSTNQEQTSLYVQASGRVTVSTRRSQQTIIPNIGSRPWVRGLSSRISIYWTIVKPGDVLVINS 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________318_______                                           
 6y5g(A) : NGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPE                                           
         :                                                                                                                          
 6y5k(A) : NGNLIAPRGYFKMRTGKSSIMRSDAPIDTCISECITPNGSIPNDKPFQNVNKITYGACPKYVKQNTLKLATGMRNVPE                                           
           ____________________________________________________________________318_______                                           

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.5
Translation
(A) 		-0.4
Closure
(%) 		57.0
Bending Residues
( green ) 		  45 - 46
  318 - 319
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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